Migrating fungal biologists

  • We said bye to Marco Marconi in December. He worked on some data mining from the 1KFG project and brought some new R tools for looking for enrichment across the CAZY, Interpro, and Pfam differences in species.

Marco

  • We welcome Plant Pathology graduate student Derreck Carter-House to the lab in January – after spending time working on molecular biology projects in plants and plant-microbe interactions in another lab. carterhouseweb
  • Jason went across to England to serve on Ensembl Genomes  SAB and give seminar at University of Exeter – he came back with more appreciation for sunny California winters.
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Recent lab news

The past few months have passed quickly but wanted to share a few updates.

Jason presented at the EMBO Eukaryotes meeting in Spain, Mexican Mycology Congress, Univ of Arizona, attended the Kavli Frontiers meeting, co-organized the Southern California Eukaryotic Pathogens meeting held again at UCR and taught graduate course on Programming and Data analyses.

The past few months we hosted Yinka Odebode from University of Lagos from August to November. He was supported by the West African Research Association. Yinka learned about ITS sequencing of fungi to identify his isolates in his work in Africa. He also explored properties of dust associated fungi in Nigeria before he returned home in November.

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We also welcomed Marco Marconi from Madrid for a few months and is working on comparative genomics of fungi using the 1KFG datasets.

Starting in  September we welcomed new graduate student in Plant Pathology, Nuttapon Pombubpa (right). Here he is (right) enjoying lunch along with visiting student Claudia Coleine and graduate student Sawyer.

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We gathered to say goodbye to project scientist Peng Liu who returned to China in December. Here she is with postdoc Jinfeng and visiting student Zhinquan.
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Undergraduates Dillon and Jericho joined us for lunch as well. They have both worked closely with Peng this Summer and Fall.lablunch4

Most of the lab together for a farewell lunch for Peng including Deane on the far right.lablunch5

Happy trails!

A quick note to say congrats and good luck to postdocs and students who finished up the summer.

Graduate student Steven Ahrendt who graduated from the GGB program and is now a postdoc at the JGI / UC Berkeley.

Postdoc Ousmane Cissé finished his fellowship from the Swiss National Science Foundation and moved on to the NIH on a fellowship to work on Pneumocystis.

Postdoc Rod Olarte moved to the University of Minnesota on a NSF postdoctoral fellowship.

Undergraduates Dillon McDonald and Christina Uriarte also finished their summer projects in the HSI-STEM and MARCU programs.

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Congratulations Dr Yizhou Wang

The end of the quarter was a blur but I wanted to properly congratulate Yizhou Wang. Dr Wang successfully defended his PhD in December and submitted his dissertation “Discovery and Properties of Small RNAs from Meiotic Silencing by Unpaired DNA in Neurospora crassa”  in the Plant Biology graduate program. He is our newest graduate from the lab and we couldn’t be happier and proud for him. He was able to complete a concentration MS in Statistics at the same time and was able to master bioinformatics and data analysis of next generation sequencing and comparative genomics along with small RNA Northerns, Southern Blots, and Neurospora culturing and care. He has been a great asset to the lab and I am delighted that he has finished this part of his education and training and excited for his next steps.

Yizhou_Asilomar_1He is serious about his cooking, treating us to some great meals from BBQ to a Chinese seafood extravaganza.
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