sordario_pairwise_diamond — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome.novelties.html Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup.core.html Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup.losses.html

Run summary

Parameters and proteomes used to generate these reports.

Ingroup proteomes
4
Outgroup proteomes
8
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95

Ingroup (4)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
NcraNeurospora crassa OR74ASordariomycete
AfumAspergillus fumigatus Af293Eurotiomycete
FgraPH1Fusarium graminearum PH-1Sordariomycete
CimmCoccidioides immitis WA_211Eurotiomycete

Outgroup (8)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
NirrNeolecta irregularis DAH-3Taphrinomycotina
SpomSchizosaccharomyces pombe 972hTaphrinomycotina
ScerSaccharomyces cerevisiae S288cSaccharomycotina
YlipYarrowia lipolytica CLIB122Saccharomycotina
ZtriZymoseptoria triticiDothideomycete
CneoH99Cryptococcus neoformans H99Basidiomycota
CcinCoprinus cinerea okyama 7-130Basidiomycota
McirMucor circinelloides 1006PhLMucoromycotina