Standard Operating Procedures
File naming
On HPCC the data are stored in
/bigdata/stajichlab/
and within that folder is your own stuff. bigdata
Data organization
bigdata
- your ownshared/projects
are intended to be collaborative analysis environments.Sequence Data
primary sequence data is stored in shared/SeqData
these are primary sequence from the sequencer and usually organized by date or flow cell code. They are to immutable and you analysis pipelines should link to this folder but not edit or update these files.
Best Practices would be to deposit the data at NCBI SRA as soon as you know the data are accurate.
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