Stajich Laboratory for Fungal Evolutionary Genomics

Research

Research in the Stajich lab encompass a variety of topics from Evolution, Genomics, Mycology, Microbiology, and Bioinformatics.

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2025

2024

2023

Extremophilic and extremotolerant fungi.
Extremophilic and extremotolerant fungi.
Cene Gostinčar, Jason E Stajich, Nina Gunde-Cimerman
Current biology : CB  ·  24 Jul 2023  ·  pmid:37490857

2022

The future of fungi: threats and opportunities.
The future of fungi: threats and opportunities.
Nicola T Case, Judith Berman, David S Blehert, Robert A Cramer, Christina Cuomo, …, John W Taylor, Dawn Thompson, Gerard D Wright, Joseph Heitman, Leah E Cowen
G3 (Bethesda, Md.)  ·  04 Nov 2022  ·  pmid:36179219
Fungi are key players in extreme ecosystems.
Fungi are key players in extreme ecosystems.
Claudia Coleine, Jason E Stajich, Laura Selbmann
Trends in ecology & evolution  ·  01 Mar 2022  ·  pmid:35246323

2021

2020

Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES.
Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES.
Laura Selbmann, Zsigmond Benkő, Claudia Coleine, Sybren de Hoog, Claudio Donati, …, Vania A Vicente, Emanuel M Souza, Polona Zalar, Allison K Walker, Jason E Stajich
Life (Basel, Switzerland)  ·  19 Dec 2020  ·  pmid:33352712
Beyond the extremes: Rocks as ultimate refuge for fungi in drylands.
Beyond the extremes: Rocks as ultimate refuge for fungi in drylands.
Claudia Coleine, Jason E Stajich, Asunción de Los Ríos, Laura Selbmann
Mycologia  ·  24 Nov 2020  ·  pmid:33232202
Best Practices for Successfully Writing and Publishing a Genome Announcement in i Microbiology Resource Announcements i
Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements
Julie C Dunning Hotopp, David A Baltrus, Vincent M Bruno, John J Dennehy, Steven R Gill, …, Simon Roux, Jason E Stajich, Kenneth M Stedman, Frank J Stewart, J Cameron Thrash
Microbiology resource announcements  ·  03 Sep 2020  ·  pmid:32883786
Toward a Fully Resolved Fungal Tree of Life.
Toward a Fully Resolved Fungal Tree of Life.
Timothy Y James, Jason E Stajich, Chris Todd Hittinger, Antonis Rokas
Annual review of microbiology  ·  13 Jul 2020  ·  pmid:32660385
Behavioral betrayal: How select fungal parasites enlist living insects to do their bidding.
Behavioral betrayal: How select fungal parasites enlist living insects to do their bidding.
Brian Lovett, Angie Macias, Jason E Stajich, John Cooley, Jørgen Eilenberg, Henrik H de Fine Licht, Matt T Kasson
PLoS pathogens  ·  18 Jun 2020  ·  pmid:32555716
Threats Posed by the Fungal Kingdom to Humans, Wildlife, and Agriculture.
Threats Posed by the Fungal Kingdom to Humans, Wildlife, and Agriculture.
Matthew C Fisher, Sarah J Gurr, Christina A Cuomo, David S Blehert, Hailing Jin, …, John W Taylor, Gerard D Wright, Joseph Heitman, Arturo Casadevall, Leah E Cowen
mBio  ·  05 May 2020  ·  pmid:32371596

2019

Reproduction and Dispersal of Biological Soil Crust Organisms
Reproduction and Dispersal of Biological Soil Crust Organisms
Steven D. Warren, Larry L. Clair, Lloyd R. Stark, Louise A. Lewis, Nuttapon Pombubpa, Tania Kurbessoian, Jason E. Stajich, Zachary T. Aanderud
Frontiers in Ecology and Evolution  ·  04 Oct 2019  ·  doi:10.3389/fevo.2019.00344
Future-Proofing Your i Microbiology Resource Announcements i Genome Assembly for Reproducibility and Clarity
Future-Proofing Your Microbiology Resource Announcements Genome Assembly for Reproducibility and Clarity
David A Baltrus, Christina A Cuomo, John J Dennehy, Julie C Dunning Hotopp, Julia A Maresca, Irene L G Newton, David A Rasko, Antonis Rokas, Simon Roux, Jason E Stajich
Microbiology resource announcements  ·  05 Sep 2019  ·  pmid:31488541
Fungi in the Marine Environment: Open Questions and Unsolved Problems.
Fungi in the Marine Environment: Open Questions and Unsolved Problems.
Anthony Amend, Gaetan Burgaud, Michael Cunliffe, Virginia P Edgcomb, Cassandra L Ettinger, …, Jason Stajich, José Vargas-Muñiz, Allison K Walker, Oded Yarden, Amy S Gladfelter
mBio  ·  05 Mar 2019  ·  pmid:30837337

2018

2017

The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
Joseph W Spatafora, M Catherine Aime, Igor V Grigoriev, Francis Martin, Jason E Stajich, Meredith Blackwell
Microbiology spectrum  ·  01 Sep 2017  ·  pmid:28917057
Fungal Genomes and Insights into the Evolution of the Kingdom.
Fungal Genomes and Insights into the Evolution of the Kingdom.
Jason E Stajich
Microbiology spectrum  ·  01 Jul 2017  ·  pmid:28820125

2016

Fungal Evolution: Mucor and Phycomyces See Double.
Fungal Evolution: Mucor and Phycomyces See Double.
Jason E Stajich
Current biology : CB  ·  22 Aug 2016  ·  pmid:27554660

2015

Meeting Report: Fungal Genomics Meets Social Media: Highlights of the 28th Fungal Genetics Conference at Asilomar.
Meeting Report: Fungal Genomics Meets Social Media: Highlights of the 28th Fungal Genetics Conference at Asilomar.
Michelle Momany, Antonio Di Pietro, William G Alexander, Bridget M Barker, Omar S Harb, …, Francis Martin, J Chris Pires, Jason E Stajich, Bart P H J Thomma, Sarah Unruh
G3 (Bethesda, Md.)  ·  01 Dec 2015  ·  pmid:27034999

2014

2013

Toward genome-enabled mycology.
Toward genome-enabled mycology.
David S Hibbett, Jason E Stajich, Joseph W Spatafora
Mycologia  ·  08 Aug 2013  ·  pmid:23928422

2012

2011

2010

A molecular perspective: biology of the emerging pathogen Batrachochytrium dendrobatidis.
A molecular perspective: biology of the emerging pathogen Batrachochytrium dendrobatidis.
Erica Bree Rosenblum, Matthew C Fisher, Timothy Y James, Jason E Stajich, Joyce E Longcore, Lydia R Gentry, Thomas J Poorten
Diseases of aquatic organisms  ·  01 Nov 2010  ·  pmid:21268975
The deadly chytrid fungus: a story of an emerging pathogen.
The deadly chytrid fungus: a story of an emerging pathogen.
Erica Bree Rosenblum, Jamie Voyles, Thomas J Poorten, Jason E Stajich
PLoS pathogens  ·  29 Jan 2010  ·  pmid:20126439

2009

The fungi.
The fungi.
Jason E Stajich, Mary L Berbee, Meredith Blackwell, David S Hibbett, Timothy Y James, Joseph W Spatafora, John W Taylor
Current biology : CB  ·  29 Sep 2009  ·  pmid:19788875

2008

2007

2006

Open source tools and toolkits for bioinformatics: significance, and where are we
Open source tools and toolkits for bioinformatics: significance, and where are we?
Jason E Stajich, Hilmar Lapp
Briefings in bioinformatics  ·  09 Aug 2006  ·  pmid:16899494

2005

2004

2003

2002

2001