Research
Research in the Stajich lab encompass a variety of topics from Evolution, Genomics, Mycology, Microbiology, and Bioinformatics.
All
2025
 
      
    
    
      
      
      
        Coordinated regulation of Mdr1- and Cdr1-mediated protection from antifungals by the Mrr1 transcription factor in emerging
      
      
      
  
        mBio
         · 
        07 Oct 2025
         · 
        pmid:41055359
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Inferring fungal cis-regulatory networks from genome sequences via unsupervised and interpretable representation learning.
      
      
      
  
        Genetics
         · 
        30 Sep 2025
         · 
        pmid:41022589
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Soil drivers of fungal, bacterial and plant diversity in contaminated Southern Californian sites: Implications for dryland bioremediation.
      
      
      
  
        The Science of the total environment
         · 
        06 Sep 2025
         · 
        pmid:40915141
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genome annotation of
            Aspergillus melleus
            strain CBS 546.65
      
      
      
  
        Microbiology Resource Announcements
         · 
        25 Aug 2025
         · 
        doi:10.1128/mra.00519-25
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Dynamic remodeling of centrioles and the microtubule cytoskeleton in the lifecycle of chytrid fungi.
      
      
      
  
        Molecular biology of the cell
         · 
        20 Aug 2025
         · 
        pmid:40833813
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Kingdom-wide CRISPR guide design with ALLEGRO.
      
      
      
  
        Nucleic acids research
         · 
        11 Aug 2025
         · 
        pmid:40829801
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Celebrating the fifth edition of the International Symposium on Fungal Stress – ISFUS, a decade after its 2014 debut
      
      
      
  
        Fungal Biology
         · 
        01 Aug 2025
         · 
        doi:10.1016/j.funbio.2025.101590
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Phyling: phylogenetic inference from annotated genomes
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        01 Aug 2025
         · 
        doi:10.1101/2025.07.30.666921
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Draft genome of Conoideocrella luteorostrata ARSEF 14590 (Clavicipitaceae), an entomopathogenic fungus with a wealth of biosynthetic and biocontrol potential
      
      
      
  
        Microbiology Resource Announcements
         · 
        23 Jul 2025
         · 
        doi:10.1128/mra.01273-24
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Draft genome sequence of an uncultured archaeon from Antarctic endolithic communities
      
      
      
  
        Microbiology Resource Announcements
         · 
        23 Jul 2025
         · 
        doi:10.1128/mra.00427-25
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Comparative Genomics Reveals Intra and Inter Species Variation in the Pathogenic Fungus Batrachochytrium dendrobatidis
      
      
      
  
        Genome Biology and Evolution
         · 
        30 May 2025
         · 
        doi:10.1093/gbe/evaf114
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Giant transposons promote strain heterogeneity in a major fungal pathogen.
      
      
      
  
        mBio
         · 
        12 May 2025
         · 
        pmid:40353686
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        A Novel Sarocladium spinificis Strain Suppresses Coccidioides posadasii Growth Morphological and Genetic Perspectives
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        31 Mar 2025
         · 
        doi:10.1101/2025.03.31.646452
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Activation of the Trichodimerol Pathway through Deletion of mcrA in Marine Penicillium rubens YAP001
      
      
      
  
        ACS chemical biology
         · 
        17 Mar 2025
         · 
        pmid:40097246
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Increased aridity is associated with diversity and composition changes in the biocrust mycobiome
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        05 Mar 2025
         · 
        doi:10.1101/2025.03.05.641731
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Eukaryotic MAGs recovered from deep metagenomic sequencing of the seagrass, Zostera marina, include a novel chytrid in the order Lobulomycetales
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        11 Feb 2025
         · 
        doi:10.1101/2025.02.11.637735
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Fungal impacts on Earth’s ecosystems
      
      
      
  
        Nature
         · 
        05 Feb 2025
         · 
        doi:10.1038/s41586-024-08419-4
      
      
        
        
        
          
  
        
      
    
      
      
      
        Assessing the Evolutionary Trajectory of Arbuscular Mycorrhizal Conserved Genes in Seagrasses and Aquatic Close Relatives
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        25 Jan 2025
         · 
        doi:10.1101/2025.01.23.634575
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Absolute abundance unveils Basidiobolus as a cross-domain bridge indirectly bolstering gut microbiome homeostasis
      
      
      
  
        The ISME Journal
         · 
        01 Jan 2025
         · 
        doi:10.1093/ismejo/wraf150
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti
      
      
      
  
        Studies in Mycology
         · 
        01 Jan 2025
         · 
        doi:10.3114/sim.2025.111.03
      
      
        
        
        
          
  
        
      
    2024
 
      
    
    
      
      
      
        Novel Glomeromycotina-Moss Associations Identified in California Dryland Biocrusts
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        28 Dec 2024
         · 
        doi:10.1101/2024.12.27.630416
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Rhinocladiella similis: A Model Eukaryotic Organism for Astrobiological Studies on Microbial Interactions with Martian Soil Analogs
      
      
      
  
        JACS Au
         · 
        23 Dec 2024
         · 
        doi:10.1021/jacsau.4c00869
      
      
        
        
        
          
  
        
      
    
      
      
      
        Genomic streamlining of seagrass-associated Colletotrichum sp. may be related to its adaptation to a marine monocot host
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        17 Dec 2024
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        doi:10.1101/2024.12.17.629027
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        A genomic resource for exploring bacterial-viral dynamics in seagrass ecosystems
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        06 Dec 2024
         · 
        doi:10.1101/2024.12.06.627215
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Familiar fungal friends and foes
      
      
      
  
        Current Biology
         · 
        01 Dec 2024
         · 
        doi:10.1016/j.cub.2024.11.005
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Draft genome sequences for Neonectria magnoliae and Neonectria punicea, canker pathogens of Liriodendron tulipifera and Acer saccharum in West Virginia
      
      
      
  
        Microbiology resource announcements
         · 
        27 Nov 2024
         · 
        pmid:39601523
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        A Cluster of Diutina catenulata Funguria in Patients with Coronavirus Disease 2019 (COVID-19) Hospitalized in a Tertiary Reference Hospital from Rio de Janeiro, Brazil
      
      
      
  
        Current microbiology
         · 
        03 Sep 2024
         · 
        pmid:39223407
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Description of new micro-colonial fungi species Neophaeococcomyces mojavensis, Coniosporium tulheliwenetii, and Taxawa tesnikishii cultured from biological soil crusts
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        13 Jun 2024
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        doi:10.1101/2024.06.12.598762
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Prevalence and diversity of TAL effector-like proteins in fungal endosymbiotic
      
      
      
  
        Microbial genomics
         · 
        01 Jun 2024
         · 
        pmid:38860878
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genomic and morphological characterization of Knufia obscura isolated from the Mars 2020 spacecraft assembly facility.
      
      
      
  
        Scientific reports
         · 
        28 May 2024
         · 
        pmid:38806503
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Study of fungal cell wall evolution through its monosaccharide composition: An insight into fungal species interacting with plants.
      
      
      
  
        Cell surface (Amsterdam, Netherlands)
         · 
        25 May 2024
         · 
        pmid:38873189
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in
      
      
      
  
        eLife
         · 
        20 May 2024
         · 
        pmid:38767950
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Epidemiological, clinical, and genomic landscape of coccidioidomycosis in northeastern Brazil.
      
      
      
  
        Nature communications
         · 
        12 Apr 2024
         · 
        pmid:38609393
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        An endogenous DNA virus in an amphibian-killing fungus associated with pathogen genotype and virulence.
      
      
      
  
        Current biology : CB
         · 
        14 Mar 2024
         · 
        pmid:38490202
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Tracing histoplasmosis genomic epidemiology and species occurrence across the USA.
      
      
      
  
        Emerging microbes & infections
         · 
        11 Mar 2024
         · 
        pmid:38465644
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Class-wide genomic tendency throughout specific extremes in black fungi
      
      
      
  
        Fungal Diversity
         · 
        26 Feb 2024
         · 
        doi:10.1007/s13225-024-00533-y
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Draft genome sequence of a black yeast fungus
            Exophiala xenobiotica
            isolated from La Brea Tar Pits
      
      
      
  
        Microbiology Resource Announcements
         · 
        15 Feb 2024
         · 
        doi:10.1128/mra.00913-23
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Herptile gut microbiomes: a natural system to study multi-kingdom interactions between filamentous fungi and bacteria.
      
      
      
  
        mSphere
         · 
        13 Feb 2024
         · 
        pmid:38349154
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert.
      
      
      
  
        Microbiology resource announcements
         · 
        08 Feb 2024
         · 
        pmid:38329355
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Haplotype phased genome of ‘Fairchild’ mandarin highlights influence of local chromatin state on gene expression
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        24 Jan 2024
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        doi:10.1101/2024.01.20.575729
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Metagenomics untangles potential adaptations of Antarctic endolithic bacteria at the fringe of habitability.
      
      
      
  
        The Science of the total environment
         · 
        19 Jan 2024
         · 
        pmid:38244622
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting.
      
      
      
  
        Microbiology resource announcements
         · 
        08 Jan 2024
         · 
        pmid:38189307
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Discovery of giant viruses as past and present infections of zoosporic fungi
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        05 Jan 2024
         · 
        doi:10.1101/2024.01.04.574182
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Fungi from Extreme Environments: Genome Sequences and Beyond
      
      
      
  
        The Mycota
         · 
        01 Jan 2024
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        doi:10.1007/978-3-031-75666-5_3
      
      
        
        
        
          
  
        
      
    2023
      
      
      
        Key processes required for the different stages of fungal carnivory by a nematode-trapping fungus.
      
      
      
  
        PLoS biology
         · 
        21 Nov 2023
         · 
        pmid:37988381
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        The reference genome assembly of the bright cobblestone lichen, Acarospora socialis.
      
      
      
  
        The Journal of heredity
         · 
        15 Nov 2023
         · 
        pmid:37740386
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Evaluation of Different Gene Prediction Tools in Coccidioides immitis
      
      
      
  
        Journal of Fungi
         · 
        09 Nov 2023
         · 
        doi:10.3390/jof9111094
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Prevalence and diversity of TAL effector-like proteins in fungal endosymbiotic Mycetohabitans spp.
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        16 Oct 2023
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        doi:10.1101/2023.10.16.562584
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Geographical survey of the mycobiome and microbiome of Southern California glassy-winged sharpshooters.
      
      
      
  
        mSphere
         · 
        06 Oct 2023
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        pmid:37800904
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genomic characterization and radiation tolerance of Naganishia kalamii sp. nov. and Cystobasidium onofrii sp. nov. from Mars 2020 mission assembly facilities.
      
      
      
  
        IMA fungus
         · 
        11 Aug 2023
         · 
        pmid:37568226
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Extremophilic and extremotolerant fungi.
      
      
      
  
        Current biology : CB
         · 
        24 Jul 2023
         · 
        pmid:37490857
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?
      
      
      
  
        Microorganisms
         · 
        18 Jul 2023
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        pmid:37513002
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Mrs4 loss of function in fungi during adaptation to the cystic fibrosis lung
      
      
      
  
        mBio
         · 
        11 Jul 2023
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        doi:10.1128/mbio.01171-23
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Patterns and determinants of the global herbivorous mycobiome.
      
      
      
  
        Nature communications
         · 
        26 Jun 2023
         · 
        pmid:37365172
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits.
      
      
      
  
        Nature ecology & evolution
         · 
        22 Jun 2023
         · 
        pmid:37349567
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        In host evolution of Exophiala dermatitidis in cystic fibrosis lung micro-environment
      
      
      
  
        G3: Genes, Genomes, Genetics
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        09 Jun 2023
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        doi:10.1093/g3journal/jkad126
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen
      
      
      
  
        Microbiology resource announcements
         · 
        08 Jun 2023
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        pmid:37289095
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Landscape characteristics shape surface soil microbiomes in the Chihuahuan Desert
      
      
      
  
        Frontiers in Microbiology
         · 
        07 Jun 2023
         · 
        doi:10.3389/fmicb.2023.1135800
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability
      
      
      
  
        Microbiome
         · 
        08 May 2023
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        doi:10.1186/s40168-023-01554-6
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Identification of the Neoaspergillic Acid Biosynthesis Gene Cluster by Establishing an In Vitro CRISPR-Ribonucleoprotein Genetic System in Aspergillus melleus
      
      
      
  
        ACS omega
         · 
        01 May 2023
         · 
        pmid:37214671
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genome Sequence and Assembly of 18 Fusarium Isolates from Florida Citrus under High Huanglongbing Disease Pressure and California Citrus under Low Huanglongbing Disease Pressure.
      
      
      
  
        Microbiology resource announcements
         · 
        12 Apr 2023
         · 
        pmid:37042758
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors.
      
      
      
  
        Genome biology and evolution
         · 
        06 Apr 2023
         · 
        pmid:36930540
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Microbiome diversity, composition and assembly in a California citrus orchard
      
      
      
  
        Frontiers in Microbiology
         · 
        22 Feb 2023
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        doi:10.3389/fmicb.2023.1100590
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists.
      
      
      
  
        Microbiology spectrum
         · 
        06 Feb 2023
         · 
        pmid:36744882
      
      
        
        
        
          
  
        
      
    
      
      
      
        Phylogenomic analysis of the Neocallimastigomycota: proposal of Caecomycetaceae fam. nov., Piromycetaceae fam. nov., and emended description of the families Neocallimastigaceae and Anaeromycetaceae
      
      
      
  
        International journal of systematic and evolutionary microbiology
         · 
        01 Feb 2023
         · 
        pmid:36827202
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi.
      
      
      
  
        Genome biology and evolution
         · 
        04 Jan 2023
         · 
        pmid:36617272
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Botrytis cinereasmall RNAs are associated with tomato AGO1 and silence tomato defense-related target genes supporting cross-kingdom RNAi
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        02 Jan 2023
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        doi:10.1101/2022.12.30.522274
      
      
        
        
        
          
  
        
      
    2022
 
      
    
    
      
      
      
        Description and Genome Characterization of Three Novel Fungal Strains Isolated from Mars 2020 Mission-Associated Spacecraft Assembly Facility Surfaces—Recommendations for Two New Genera and One Species
      
      
      
  
        Journal of Fungi
         · 
        23 Dec 2022
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        doi:10.3390/jof9010031
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Cataloging Viral Diversity from Nonaxenic Terrestrial Cyanobacteria Cultures
      
      
      
  
        Cold Spring Harbor Laboratory
         · 
        14 Dec 2022
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        doi:10.1101/2022.12.14.520320
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        A single fungal strain was the unexpected cause of a mass aspergillosis outbreak in the world’s largest and only flightless parrot
      
      
      
  
        iScience
         · 
        01 Dec 2022
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        doi:10.1016/j.isci.2022.105470
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        The pan-genome of Aspergillus fumigatus provides a high-resolution view of its population structure revealing high levels of lineage-specific diversity driven by recombination
      
      
      
  
        PLOS Biology
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        17 Nov 2022
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        doi:10.1371/journal.pbio.3001890
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        The future of fungi: threats and opportunities.
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        04 Nov 2022
         · 
        pmid:36179219
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Transcriptome and population structure of glassy-winged sharpshooters (Homalodisca vitripennis) with varying insecticide resistance in southern California.
      
      
      
  
        BMC genomics
         · 
        22 Oct 2022
         · 
        pmid:36273137
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Manipulation of the Global Regulator mcrA Upregulates Secondary Metabolite Production in Aspergillus wentii Using CRISPR-Cas9 with In Vitro Assembled Ribonucleoproteins
      
      
      
  
        ACS chemical biology
         · 
        05 Oct 2022
         · 
        pmid:36197945
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions.
      
      
      
  
        Cell
         · 
        29 Sep 2022
         · 
        pmid:36179670
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Single nucleotide polymorphisms and chromosomal copy number variation may impact the Sporothrix brasiliensis antifungal susceptibility and sporotrichosis clinical outcomes.
      
      
      
  
        Fungal genetics and biology : FG & B
         · 
        21 Sep 2022
         · 
        pmid:36152775
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Diploid-dominant life cycles characterize the early evolution of Fungi.
      
      
      
  
        Proceedings of the National Academy of Sciences of the United States of America
         · 
        29 Aug 2022
         · 
        pmid:36037379
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Metagenome-Assembled Genomes of Bacteria Associated with Massospora cicadina Fungal Plugs from Infected Brood VIII Periodical Cicadas.
      
      
      
  
        Microbiology resource announcements
         · 
        29 Aug 2022
         · 
        pmid:36036588
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        An Improved 1.5-Gigabase Draft Assembly of Massospora cicadina (Zoopagomycota), an Obligate Fungal Parasite of 13- and 17-Year Cicadas.
      
      
      
  
        Microbiology resource announcements
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        29 Aug 2022
         · 
        pmid:36036589
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Comparative Genomics Reveals that Metabolism Underlies Evolution of Entomopathogenicity in Bee-loving Ascosphaera spp. Fungi
      
      
      
  
        Journal of invertebrate pathology
         · 
        03 Aug 2022
         · 
        pmid:35933037
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies
      
      
      
  
        iScience
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        01 Aug 2022
         · 
        doi:10.1016/j.isci.2022.104840
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        The Early Terrestrial Fungal Lineage of Conidiobolus - Transition from Saprotroph to Parasitic Lifestyle
      
      
      
  
        Journal of fungi (Basel, Switzerland)
         · 
        28 Jul 2022
         · 
        pmid:36012777
      
      
        
        
        
      
     
      
    
    
      
      
      
        The International Space Station Environment Triggers Molecular Responses in Aspergillus niger
      
      
      
  
        Frontiers in microbiology
         · 
        30 Jun 2022
         · 
        pmid:35847112
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Landscape Topography and Regional Drought Alters Dust Microbiomes in the Sierra Nevada of California.
      
      
      
  
        Frontiers in microbiology
         · 
        28 Jun 2022
         · 
        pmid:35836417
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        The population genetics of the causative agent of snake fungal disease indicate recent introductions to the USA.
      
      
      
  
        PLoS biology
         · 
        23 Jun 2022
         · 
        pmid:35737674
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Metagenome-Assembled Genomes of Bacterial Symbionts Associated with Insecticide-Resistant and -Susceptible Individuals of the Glassy-Winged Sharpshooter (Homalodisca vitripennis).
      
      
      
  
        Microbiology resource announcements
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        16 Jun 2022
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        pmid:35708345
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Avian-associated Aspergillus fumigatus displays broad phylogenetic distribution, no evidence for host specificity, and multiple genotypes within epizootic events
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        06 May 2022
         · 
        pmid:35377435
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Early branching arbuscular mycorrhizal fungus Paraglomus occultum carries a small and repeat-poor genome compared to relatives in the Glomeromycotina
      
      
      
  
        Microbial Genomics
         · 
        26 Apr 2022
         · 
        doi:10.1099/mgen.0.000810
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Efficient CRISPR/Cas9-mediated genome modification of the glassy-winged sharpshooter Homalodisca vitripennis (Germar)
      
      
      
  
        Scientific reports
         · 
        19 Apr 2022
         · 
        pmid:35440677
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        A chromosomal-level reference genome of the widely utilized Coccidioides posadasii laboratory strain Silveira
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        04 Apr 2022
         · 
        pmid:35137016
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Rocks support a distinctive and consistent mycobiome across contrasting dry regions of Earth.
      
      
      
  
        FEMS microbiology ecology
         · 
        31 Mar 2022
         · 
        pmid:35298630
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Fungi are key players in extreme ecosystems.
      
      
      
  
        Trends in ecology & evolution
         · 
        01 Mar 2022
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        pmid:35246323
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Exploring Space via Astromycology A Report on the CIFAR Programs Earth 4D and Fungal Kingdom Inaugural Joint Meeting
      
      
      
  
        Astrobiology
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        23 Feb 2022
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        pmid:35196462
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Decoding Transcription Regulatory Mechanisms Associated with Coccidioides immitis Phase Transition Using Total RNA
      
      
      
  
        mSystems
         · 
        25 Jan 2022
         · 
        pmid:35076277
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genomic Characterization of Parengyodontium torokii sp. nov., a Biofilm-Forming Fungus Isolated from Mars 2020 Assembly Facility
      
      
      
  
        Journal of fungi (Basel, Switzerland)
         · 
        09 Jan 2022
         · 
        pmid:35050006
      
      
        
        
        
          
  
        
      
    2021
 
      
    
    
      
      
      
        Host Lung Environment Limits Aspergillus fumigatus Germination through an SskA-Dependent Signaling Response
      
      
      
  
        mSphere
         · 
        22 Dec 2021
         · 
        doi:10.1128/msphere.00922-21
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Understudied, underrepresented, and unknown: Methodological biases that limit detection of early diverging fungi from environmental samples
      
      
      
  
        Molecular Ecology Resources
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        10 Nov 2021
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        doi:10.1111/1755-0998.13540
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Crowdsourced analysis of fungal growth and branching on microfluidic platforms
      
      
      
  
        PLOS ONE
         · 
        29 Sep 2021
         · 
        doi:10.1371/journal.pone.0257823
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Improved draft reference genome for the Glassy-winged Sharpshooter (Homalodisca vitripennis), a vector for Pierce's disease.
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        27 Sep 2021
         · 
        pmid:34568917
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex
      
      
      
  
        Phytopathology
         · 
        09 Sep 2021
         · 
        pmid:33200960
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Seven Years at High Salinity—Experimental Evolution of the Extremely Halotolerant Black Yeast Hortaea werneckii
      
      
      
  
        Journal of Fungi
         · 
        04 Sep 2021
         · 
        doi:10.3390/jof7090723
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Aspergillus fumigatus In-Host HOG Pathway Mutation for Cystic Fibrosis Lung Microenvironment Persistence
      
      
      
  
        mBio
         · 
        31 Aug 2021
         · 
        doi:10.1128/mBio.02153-21
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Mitochondrial genomes of the human pathogens Coccidioides immitis and Coccidioides posadasii.
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        14 Jul 2021
         · 
        pmid:33871031
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Diploidy within a Haploid Genus of Entomopathogenic Fungi.
      
      
      
  
        Genome biology and evolution
         · 
        06 Jul 2021
         · 
        pmid:34247231
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Amplicon Sequencing of Rock-Inhabiting Microbial Communities from Joshua Tree National Park, USA.
      
      
      
  
        Microbiology resource announcements
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        24 Jun 2021
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        pmid:34165331
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
      
      
      
  
        Microbiology Resource Announcements
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        03 Jun 2021
         · 
        doi:10.1128/MRA.00258-21
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        High-Quality Reference Genome Sequence for the Oomycete Vegetable Pathogen Phytophthora capsici Strain LT1534.
      
      
      
  
        Microbiology resource announcements
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        27 May 2021
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        pmid:34042486
      
      
        
        
        
          
  
        
      
    
      
      
      
        Three species of Trimmatothelopsis (Acarosporaceae) from Europe and North America
      
      
      
  
        The Bryologist
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        14 May 2021
         · 
        doi:10.1639/0007-2745-124.2.271
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Transcriptional Analysis of Coccidioides immitis Mycelia and Spherules by RNA Sequencing
      
      
      
  
        Journal of fungi (Basel, Switzerland)
         · 
        07 May 2021
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        pmid:34067070
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Balancing Positive and Negative Selection - In Vivo Evolution of Candida lusitaniae MRR1
      
      
      
  
        mBio
         · 
        30 Mar 2021
         · 
        pmid:33785623
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture.
      
      
      
  
        BMC genomics
         · 
        22 Mar 2021
         · 
        pmid:33752605
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages.
      
      
      
  
        Microbiome
         · 
        19 Mar 2021
         · 
        pmid:33741058
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Effects of Simulated Microgravity on the Proteome and Secretome of the Polyextremotolerant Black Fungus
      
      
      
  
        Frontiers in genetics
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        18 Mar 2021
         · 
        pmid:33815472
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Culture-Dependent and Amplicon Sequencing Approaches Reveal Diversity and Distribution of Black Fungi in Antarctic Cryptoendolithic Communities.
      
      
      
  
        Journal of fungi (Basel, Switzerland)
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        16 Mar 2021
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        pmid:33809619
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genomic insights into the host specific adaptation of the Pneumocystis genus.
      
      
      
  
        Communications biology
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        08 Mar 2021
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        pmid:33686174
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Identification and phylogenetic analysis of RNA binding domain abundant in apicomplexans or RAP proteins.
      
      
      
  
        Microbial genomics
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        03 Mar 2021
         · 
        pmid:33656416
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        A genome-scale phylogeny of the kingdom Fungi.
      
      
      
  
        Current biology : CB
         · 
        18 Feb 2021
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        pmid:33607033
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Aspergillus fumigatus Strain-Specific Conidia Lung Persistence Causes an Allergic Broncho-Pulmonary Aspergillosis-Like Disease Phenotype.
      
      
      
  
        mSphere
         · 
        17 Feb 2021
         · 
        pmid:33597172
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        A Heterogeneously Expressed Gene Family Modulates the Biofilm Architecture and Hypoxic Growth of Aspergillus fumigatus
      
      
      
  
        mBio
         · 
        16 Feb 2021
         · 
        pmid:33593969
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        The genome of Geosiphon pyriformis reveals ancestral traits linked to the emergence of the arbuscular mycorrhizal symbiosis.
      
      
      
  
        Current biology : CB
         · 
        15 Feb 2021
         · 
        pmid:33592192
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genomic analyses of two Italian oyster mushroom Pleurotus pulmonarius strains.
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        09 Feb 2021
         · 
        pmid:33585863
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genome sequence of the oyster mushroom Pleurotus ostreatus strain PC9.
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        09 Feb 2021
         · 
        pmid:33585864
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
      
      
      
  
        The New phytologist
         · 
        06 Feb 2021
         · 
        pmid:33355923
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi.
      
      
      
  
        Scientific reports
         · 
        05 Feb 2021
         · 
        pmid:33547391
      
      
        
        
        
          
  
        
      
    2020
 
      
    
    
      
      
      
        Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES.
      
      
      
  
        Life (Basel, Switzerland)
         · 
        19 Dec 2020
         · 
        pmid:33352712
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        A novel Sporothrix brasiliensis genomic variant in Midwestern Brazil evidence for an older and wider sporotrichosis epidemic
      
      
      
  
        Emerging microbes & infections
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        01 Dec 2020
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        pmid:33155518
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Beyond the extremes: Rocks as ultimate refuge for fungi in drylands.
      
      
      
  
        Mycologia
         · 
        24 Nov 2020
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        pmid:33232202
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Clustering analysis of large-scale phenotypic data in the model filamentous fungus Neurospora crassa.
      
      
      
  
        BMC genomics
         · 
        02 Nov 2020
         · 
        pmid:33138786
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Belowground impacts of alpine woody encroachment are determined by plant traits, local climate, and soil conditions.
      
      
      
  
        Global change biology
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        08 Oct 2020
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        pmid:32902066
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.
      
      
      
  
        Proceedings of the National Academy of Sciences of the United States of America
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        05 Oct 2020
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        pmid:33020276
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        No to
      
      
      
  
        mSphere
         · 
        16 Sep 2020
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        pmid:32938701
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics.
      
      
      
  
        Fungal diversity
         · 
        16 Sep 2020
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        pmid:33364917
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses.
      
      
      
  
        mBio
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        08 Sep 2020
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        pmid:32900807
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements
      
      
      
  
        Microbiology resource announcements
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        03 Sep 2020
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        pmid:32883786
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont,
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        02 Sep 2020
         · 
        pmid:32727924
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Insights into dryland biocrust microbiome: geography, soil depth and crust type affect biocrust microbial communities and networks in Mojave Desert, USA.
      
      
      
  
        FEMS microbiology ecology
         · 
        01 Sep 2020
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        pmid:32573682
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Toward a Fully Resolved Fungal Tree of Life.
      
      
      
  
        Annual review of microbiology
         · 
        13 Jul 2020
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        pmid:32660385
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Uncovered Microbial Diversity in Antarctic Cryptoendolithic Communities Sampling three Representative Locations of the Victoria Land.
      
      
      
  
        Microorganisms
         · 
        23 Jun 2020
         · 
        pmid:32585947
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Behavioral betrayal: How select fungal parasites enlist living insects to do their bidding.
      
      
      
  
        PLoS pathogens
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        18 Jun 2020
         · 
        pmid:32555716
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Evolutionary relationships among
      
      
      
  
        Mycologia
         · 
        15 May 2020
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        pmid:32412847
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Threats Posed by the Fungal Kingdom to Humans, Wildlife, and Agriculture.
      
      
      
  
        mBio
         · 
        05 May 2020
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        pmid:32371596
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Draft Genome Sequence of the Yeast Rhodotorula sp. strain CCFEE 5036, Isolated from McMurdo Dry Valleys, Antarctica
      
      
      
  
        Microbiology resource announcements
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        02 Apr 2020
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        pmid:32241854
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Natural diversity in the predatory behavior facilitates the establishment of a robust model strain for nematode-trapping fungi.
      
      
      
  
        Proceedings of the National Academy of Sciences of the United States of America
         · 
        11 Mar 2020
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        pmid:32161129
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities.
      
      
      
  
        Microbiology resource announcements
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        05 Mar 2020
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        pmid:32139564
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Endolithic Fungal Species Markers for Harshest Conditions in the McMurdo Dry Valleys, Antarctica.
      
      
      
  
        Life (Basel, Switzerland)
         · 
        06 Feb 2020
         · 
        pmid:32041249
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Peculiar genomic traits in the stress-adapted cryptoendolithic Antarctic fungus Friedmanniomyces endolithicus.
      
      
      
  
        Fungal biology
         · 
        31 Jan 2020
         · 
        pmid:32389308
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        The monophyletic Sarcogyne canadensis–wheeleri clade, a newly recognized group sister to the European Acarospora glaucocarpa group
      
      
      
  
        The Bryologist
         · 
        13 Jan 2020
         · 
        doi:10.1639/0007-2745-123.1.011
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Airborne fungi spores distribution in various locations in Lagos, Nigeria.
      
      
      
  
        Environmental monitoring and assessment
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        03 Jan 2020
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        pmid:31900675
      
      
        
        
        
          
  
        
      
    2019
      
      
      
        Probe-Based Multiplex Real-Time PCR as a Diagnostic Tool to Distinguish Distinct Fungal Symbionts Associated With
      
      
      
  
        Plant disease
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        23 Oct 2019
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        pmid:31647694
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Reproduction and Dispersal of Biological Soil Crust Organisms
      
      
      
  
        Frontiers in Ecology and Evolution
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        04 Oct 2019
         · 
        doi:10.3389/fevo.2019.00344
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Microfluidics and Metabolomics Reveal Symbiotic Bacterial-Fungal Interactions Between Mortierella elongata and Burkholderia Include Metabolite Exchange
      
      
      
  
        Frontiers in microbiology
         · 
        01 Oct 2019
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        pmid:31632357
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Fungal biofilm morphology impacts hypoxia fitness and disease progression.
      
      
      
  
        Nature microbiology
         · 
        23 Sep 2019
         · 
        pmid:31548684
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Members of the Euwallacea fornicatus species complex exhibit promiscuous mutualism with ambrosia fungi in Taiwan.
      
      
      
  
        Fungal genetics and biology : FG & B
         · 
        10 Sep 2019
         · 
        pmid:31518652
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Future-Proofing Your Microbiology Resource Announcements Genome Assembly for Reproducibility and Clarity
      
      
      
  
        Microbiology resource announcements
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        05 Sep 2019
         · 
        pmid:31488541
      
      
        
        
        
          
  
        
      
    
      
      
      
        Molecular Dating of the Emergence of Anaerobic Rumen Fungi and the Impact of Laterally Acquired Genes.
      
      
      
  
        mSystems
         · 
        27 Aug 2019
         · 
        pmid:31455637
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Altitude and fungal diversity influence the structure of Antarctic cryptoendolithic Bacteria communities.
      
      
      
  
        Environmental microbiology reports
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        26 Aug 2019
         · 
        pmid:31393667
      
      
        
        
        
          
  
        
      
    
      
      
      
        Improved Reference Genome Sequence of Coccidioides immitis Strain WA_211, Isolated in Washington State
      
      
      
  
        Microbiology resource announcements
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        15 Aug 2019
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        pmid:31416856
      
      
        
        
        
          
  
        
      
    
      
      
      
        Horizontal Gene Transfer as an Indispensable Driver for Evolution of Neocallimastigomycota into a Distinct Gut-Dwelling Fungal Lineage.
      
      
      
  
        Applied and environmental microbiology
         · 
        18 Jul 2019
         · 
        pmid:31126947
      
      
        
        
        
          
  
        
      
    
      
      
      
        Diversity and function of fungi associated with the fungivorous millipede, Brachycybe lecontii
      
      
      
  
        Fungal ecology
         · 
        09 Jul 2019
         · 
        pmid:31871487
      
      
        
        
        
          
  
        
      
    
      
      
      
        Psychoactive plant- and mushroom-associated alkaloids from two behavior modifying cicada pathogens.
      
      
      
  
        Fungal ecology
         · 
        24 Jun 2019
         · 
        pmid:31768192
      
      
        
        
        
          
  
        
      
    
      
      
      
        Proteomic and Metabolomic Characteristics of Extremophilic Fungi Under Simulated Mars Conditions.
      
      
      
  
        Frontiers in microbiology
         · 
        15 May 2019
         · 
        pmid:31156574
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Draft Genome Sequence of an Antarctic Isolate of the Black Yeast Fungus Exophiala mesophila
      
      
      
  
        Microbiology resource announcements
         · 
        09 May 2019
         · 
        pmid:31072892
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        FGMP: assessing fungal genome completeness.
      
      
      
  
        BMC bioinformatics
         · 
        15 Apr 2019
         · 
        pmid:30987585
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Fungi in the Marine Environment: Open Questions and Unsolved Problems.
      
      
      
  
        mBio
         · 
        05 Mar 2019
         · 
        pmid:30837337
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Diversity of cytosine methylation across the fungal tree of life.
      
      
      
  
        Nature ecology & evolution
         · 
        18 Feb 2019
         · 
        pmid:30778188
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice.
      
      
      
  
        Nature communications
         · 
        07 Feb 2019
         · 
        pmid:30733435
      
      
        
        
        
          
  
        
      
    
      
      
      
        Pyricularia graminis-tritici is not the correct species name for the wheat blast fungus: response to Ceresini et al. (MPP 20:2).
      
      
      
  
        Molecular plant pathology
         · 
        01 Feb 2019
         · 
        pmid:30697917
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genome Sequence of a Lethal Vascular Wilt Fungus, Verticillium nonalfalfae, a Biological Control Used Against the Invasive Ailanthus altissima.
      
      
      
  
        Microbiology resource announcements
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        24 Jan 2019
         · 
        pmid:30701257
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota.
      
      
      
  
        The New phytologist
         · 
        12 Jan 2019
         · 
        pmid:30485448
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi).
      
      
      
  
        Molecular phylogenetics and evolution
         · 
        11 Jan 2019
         · 
        pmid:30639767
      
      
        
        
        
          
  
        
      
    2018
 
      
    
    
      
      
      
        International Space Station conditions alter genomics, proteomics, and metabolomics in Aspergillus nidulans.
      
      
      
  
        Applied microbiology and biotechnology
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        12 Dec 2018
         · 
        pmid:30539259
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Evolution of drug resistance in an antifungal-naive chronic
      
      
      
  
        Proceedings of the National Academy of Sciences of the United States of America
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        02 Nov 2018
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        pmid:30389707
      
      
        
        
        
          
  
        
      
    
      
      
      
        Parasitoid Jewel Wasp Mounts Multipronged Neurochemical Attack to Hijack a Host Brain.
      
      
      
  
        Molecular & cellular proteomics : MCP
         · 
        06 Oct 2018
         · 
        pmid:30293061
      
      
        
        
        
          
  
        
      
    
      
      
      
        Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases.
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        03 Oct 2018
         · 
        pmid:30111619
      
      
        
        
        
          
  
        
      
    
      
      
      
        Characterization of Aspergillus niger Isolated from the International Space Station.
      
      
      
  
        mSystems
         · 
        18 Sep 2018
         · 
        pmid:30246146
      
      
        
        
        
          
  
        
      
    
      
      
      
        Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis.
      
      
      
  
        BMC genomics
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        17 Jul 2018
         · 
        pmid:30016947
      
      
        
        
        
          
  
        
      
    
      
      
      
        Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes.
      
      
      
  
        Frontiers in microbiology
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        29 Jun 2018
         · 
        pmid:30008702
      
      
        
        
        
          
  
        
      
    
      
      
      
        Sun Exposure Shapes Functional Grouping of Fungi in Cryptoendolithic Antarctic Communities.
      
      
      
  
        Life (Basel, Switzerland)
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        02 Jun 2018
         · 
        pmid:29865244
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Phylogenetic and Phylogenomic Definition of Rhizopus Species
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        31 May 2018
         · 
        pmid:29674435
      
      
        
        
        
          
  
        
      
    
      
      
      
        Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast.
      
      
      
  
        BMC genomics
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        15 May 2018
         · 
        pmid:29764372
      
      
        
        
        
          
  
        
      
    
      
      
      
        Comparative Genomics Reveals the Core Gene Toolbox for the Fungus-Insect Symbiosis.
      
      
      
  
        mBio
         · 
        15 May 2018
         · 
        pmid:29764946
      
      
        
        
        
          
  
        
      
    
      
      
      
        Shrub range expansion alters diversity and distribution of soil fungal communities across an alpine elevation gradient.
      
      
      
  
        Molecular ecology
         · 
        10 May 2018
         · 
        pmid:29675967
      
      
        
        
        
          
  
        
      
    
      
      
      
        Comparative Population Genomics Analysis of the Mammalian Fungal Pathogen
      
      
      
  
        mBio
         · 
        08 May 2018
         · 
        pmid:29739910
      
      
        
        
        
          
  
        
      
    
      
      
      
        Ultra-low input transcriptomics reveal the spore functional content and phylogenetic affiliations of poorly studied arbuscular mycorrhizal fungi.
      
      
      
  
        DNA research : an international journal for rapid publication of reports on genes and genomes
         · 
        01 Apr 2018
         · 
        pmid:29211832
      
      
        
        
        
          
  
        
      
    
      
      
      
        Analysis of Transposable Elements in Coccidioides Species.
      
      
      
  
        Journal of fungi (Basel, Switzerland)
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        19 Jan 2018
         · 
        pmid:29371508
      
      
        
        
        
          
  
        
      
    
      
      
      
        Comparative genomic analysis of the 'pseudofungus'
      
      
      
  
        Open biology
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        01 Jan 2018
         · 
        pmid:29321239
      
      
        
        
        
          
  
        
      
    2017
      
      
      
        Tracking the genome-wide outcomes of a transposable element burst over decades of amplification.
      
      
      
  
        Proceedings of the National Academy of Sciences of the United States of America
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        20 Nov 2017
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        pmid:29158416
      
      
        
        
        
          
  
        
      
    
      
      
      
        Chlorophyte aspartyl aminopeptidases: Ancient origins, expanded families, new locations, and secondary functions.
      
      
      
  
        PloS one
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        12 Oct 2017
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        pmid:29023459
      
      
        
        
        
          
  
        
      
    
      
      
      
        Microbial associates of the southern mole cricket (Scapteriscus borellii) are highly pathogenic.
      
      
      
  
        Journal of invertebrate pathology
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        12 Sep 2017
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        pmid:28916147
      
      
        
        
        
          
  
        
      
    
      
      
      
        The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
      
      
      
  
        Microbiology spectrum
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        01 Sep 2017
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        pmid:28917057
      
      
        
        
        
          
  
        
      
    
      
      
      
        Bifiguratus adelaidae, gen. et sp. nov., a new member of Mucoromycotina in endophytic and soil-dwelling habitats.
      
      
      
  
        Mycologia
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        08 Aug 2017
         · 
        pmid:28876195
      
      
        
        
        
          
  
        
      
    
      
      
      
        Draft Genome Sequences of the Antarctic Endolithic Fungi Rachicladosporium antarcticum CCFEE 5527 and Rachicladosporium sp. CCFEE 5018
      
      
      
  
        Genome announcements
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        06 Jul 2017
         · 
        pmid:28684563
      
      
        
        
        
          
  
        
      
    
      
      
      
        Insight into the Recent Genome Duplication of the Halophilic Yeast
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        05 Jul 2017
         · 
        pmid:28500048
      
      
        
        
        
          
  
        
      
    
      
      
      
        Fungal Genomes and Insights into the Evolution of the Kingdom.
      
      
      
  
        Microbiology spectrum
         · 
        01 Jul 2017
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        pmid:28820125
      
      
        
        
        
          
  
        
      
    
      
      
      
        Widespread adenine N6-methylation of active genes in fungi.
      
      
      
  
        Nature genetics
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        08 May 2017
         · 
        pmid:28481340
      
      
        
        
        
          
  
        
      
    
      
      
      
        Exploring the binding properties and structural stability of an opsin in the chytrid
      
      
      
  
        PeerJ
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        27 Apr 2017
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        pmid:28462022
      
      
        
        
        
          
  
        
      
    
      
      
      
        Innovation and constraint leading to complex multicellularity in the Ascomycota.
      
      
      
  
        Nature communications
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        08 Feb 2017
         · 
        pmid:28176784
      
      
        
        
        
          
  
        
      
    
      
      
      
        RelocaTE2: a high resolution transposable element insertion site mapping tool for population resequencing.
      
      
      
  
        PeerJ
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        26 Jan 2017
         · 
        pmid:28149701
      
      
        
        
        
          
  
        
      
    2016
 
      
    
    
      
      
      
        PCR Multiplexes Discriminate Fusarium Symbionts of Invasive Euwallacea Ambrosia Beetles that Inflict Damage on Numerous Tree Species Throughout the United States.
      
      
      
  
        Plant disease
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        01 Nov 2016
         · 
        pmid:30682305
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data.
      
      
      
  
        Mycologia
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        01 Sep 2016
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        pmid:27738200
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Fungal Evolution: Mucor and Phycomyces See Double.
      
      
      
  
        Current biology : CB
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        22 Aug 2016
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        pmid:27554660
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles.
      
      
      
  
        PLoS genetics
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        13 Jun 2016
         · 
        pmid:27294409
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Deacetylation of Fungal Exopolysaccharide Mediates Adhesion and Biofilm Formation.
      
      
      
  
        mBio
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        05 Apr 2016
         · 
        pmid:27048799
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture.
      
      
      
  
        Proceedings of the National Academy of Sciences of the United States of America
         · 
        14 Mar 2016
         · 
        pmid:26976598
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota).
      
      
      
  
        Molecular phylogenetics and evolution
         · 
        20 Feb 2016
         · 
        pmid:26903035
      
      
        
        
        
          
  
        
      
    2015
 
      
    
    
      
      
      
        Meeting Report: Fungal Genomics Meets Social Media: Highlights of the 28th Fungal Genetics Conference at Asilomar.
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        01 Dec 2015
         · 
        pmid:27034999
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Cellular Subcompartments through Cytoplasmic Streaming.
      
      
      
  
        Developmental cell
         · 
        24 Aug 2015
         · 
        pmid:26305593
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Endogenous Small RNA Mediates Meiotic Silencing of a Novel DNA Transposon.
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        23 Jun 2015
         · 
        pmid:26109355
      
      
        
        
        
          
  
        
      
    
      
      
      
        Characterization of the Carbohydrate Binding Module 18 gene family in the amphibian pathogen Batrachochytrium dendrobatidis.
      
      
      
  
        Fungal genetics and biology : FG & B
         · 
        25 Mar 2015
         · 
        pmid:25819009
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        The low information content of Neurospora splicing signals: implications for RNA splicing and intron origin
      
      
      
  
        RNA
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        24 Mar 2015
         · 
        doi:10.1261/rna.047985.114
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Analysis of the Candida albicans Phosphoproteome.
      
      
      
  
        Eukaryotic cell
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        06 Mar 2015
         · 
        pmid:25750214
      
      
        
        
        
          
  
        
      
    
      
      
      
        Twenty-first century mycology: a diverse, collaborative, and highly relevant science.
      
      
      
  
        The New phytologist
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        01 Jan 2015
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        pmid:25427217
      
      
        
        
        
          
  
        
      
    2014
      
      
      
        Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis.
      
      
      
  
        BMC genomics
         · 
        29 Oct 2014
         · 
        pmid:25351875
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        MicroRNAs suppress NB domain genes in tomato that confer resistance to Fusarium oxysporum.
      
      
      
  
        PLoS pathogens
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        16 Oct 2014
         · 
        pmid:25330340
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Deciphering the uniqueness of Mucoromycotina cell walls by combining biochemical and phylogenomic approaches.
      
      
      
  
        Environmental microbiology
         · 
        22 Sep 2014
         · 
        pmid:25143134
      
      
        
        
        
          
  
        
      
    
      
      
      
        Evolutionary histories of soil fungi are reflected in their large-scale biogeography.
      
      
      
  
        Ecology letters
         · 
        09 Jun 2014
         · 
        pmid:24912000
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Literature-based gene curation and proposed genetic nomenclature for cryptococcus.
      
      
      
  
        Eukaryotic cell
         · 
        09 May 2014
         · 
        pmid:24813190
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.
      
      
      
  
        PLoS genetics
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        17 Apr 2014
         · 
        pmid:24743168
      
      
        
        
        
          
  
        
      
    2013
      
      
      
        Evolutionary origins and diversification of proteobacterial mutualists.
      
      
      
  
        Proceedings. Biological sciences
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        27 Nov 2013
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        pmid:24285193
      
      
        
        
        
          
  
        
      
    
      
      
      
        MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.
      
      
      
  
        The ISME journal
         · 
        24 Oct 2013
         · 
        pmid:24152717
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.
      
      
      
  
        PLoS genetics
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        19 Sep 2013
         · 
        pmid:24068976
      
      
        
        
        
          
  
        
      
    
      
      
      
        Toward genome-enabled mycology.
      
      
      
  
        Mycologia
         · 
        08 Aug 2013
         · 
        pmid:23928422
      
      
        
        
        
          
  
        
      
    
      
      
      
        Shared signatures of parasitism and phylogenomics unite Cryptomycota and microsporidia.
      
      
      
  
        Current biology : CB
         · 
        08 Aug 2013
         · 
        pmid:23932404
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Sequential utilization of hosts from different fly families by genetically distinct, sympatric populations within the Entomophthora muscae species complex.
      
      
      
  
        PloS one
         · 
        08 Aug 2013
         · 
        pmid:23951101
      
      
        
        
        
          
  
        
      
     
      
    
    
      
      
      
        Neurospora and the dead-end hypothesis: genomic consequences of selfing in the model genus.
      
      
      
  
        Evolution; international journal of organic evolution
         · 
        05 Aug 2013
         · 
        pmid:24299411
      
      
        
        
        
          
  
        
      
    
      
      
      
        The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice.
      
      
      
  
        G3 (Bethesda, Md.)
         · 
        21 Jun 2013
         · 
        pmid:23576519
      
      
        
        
        
          
  
        
      
    
      
      
      
        Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data.
      
      
      
  
        Proceedings of the National Academy of Sciences of the United States of America
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        06 May 2013
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        pmid:23650365
      
      
        
        
        
          
  
        
      
    
      
      
      
        Meeting report: fungal its workshop (october 2012).
      
      
      
  
        Standards in genomic sciences
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        15 Apr 2013
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        pmid:23961317
      
      
        
        
        
          
  
        
      
    
      
      
      
        Regional control of histone H3 lysine 27 methylation in Neurospora.
      
      
      
  
        Proceedings of the National Academy of Sciences of the United States of America
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        25 Mar 2013
         · 
        pmid:23530226
      
      
        
        
        
          
  
        
      
    
      
      
      
        5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea.
      
      
      
  
        BMC genomics
         · 
        20 Mar 2013
         · 
        pmid:23514374
      
      
        
        
        
          
  
        
      
    
      
      
      
        Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis.
      
      
      
  
        mBio
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        22 Jan 2013
         · 
        pmid:23341551
      
      
        
        
        
          
  
        
      
    2012
      
      
      
        Analyses of expressed sequence tags in Neurospora reveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi.
      
      
      
  
        BMC evolutionary biology
         · 
        27 Nov 2012
         · 
        pmid:23186325
      
      
        
        
        
          
  
        
      
    
      
      
      
        Species-specific chitin-binding module 18 expansion in the amphibian pathogen Batrachochytrium dendrobatidis.
      
      
      
  
        mBio
         · 
        19 Jun 2012
         · 
        pmid:22718849
      
      
        
        
        
          
  
        
      
    
      
      
      
        Unidirectional evolutionary transitions in fungal mating systems and the role of transposable elements.
      
      
      
  
        Molecular biology and evolution
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        15 May 2012
         · 
        pmid:22593224
      
      
        
        
        
          
  
        
      
    2011
      
      
      
        FungiDB: an integrated functional genomics database for fungi.
      
      
      
  
        Nucleic acids research
         · 
        07 Nov 2011
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        pmid:22064857
      
      
        
        
        
          
  
        
      
    
      
      
      
        Genomic transition to pathogenicity in chytrid fungi.
      
      
      
  
        PLoS pathogens
         · 
        03 Nov 2011
         · 
        pmid:22072962
      
      
        
        
        
          
  
        
      
    
      
      
      
        Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma.
      
      
      
  
        Genetics
         · 
        12 Jul 2011
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        pmid:21750257
      
      
        
        
        
          
  
        
      
    
      
      
      
        Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.
      
      
      
  
        mBio
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        08 Feb 2011
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        pmid:21304167
      
      
        
        
        
          
  
        
      
    2010
      
      
      
        A molecular perspective: biology of the emerging pathogen Batrachochytrium dendrobatidis.
      
      
      
  
        Diseases of aquatic organisms
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        01 Nov 2010
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        pmid:21268975
      
      
        
        
        
          
  
        
      
    
      
      
      
        Analysis of the Basidiomycete Coprinopsis cinerea reveals conservation of the core meiotic expression program over half a billion years of evolution.
      
      
      
  
        PLoS genetics
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        23 Sep 2010
         · 
        pmid:20885784
      
      
        
        
        
          
  
        
      
    
      
      
      
        Using the Generic Synteny Browser (GBrowse_syn).
      
      
      
  
        Current protocols in bioinformatics
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        01 Sep 2010
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        pmid:20836076
      
      
        
        
        
          
  
        
      
    
      
      
      
        Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex.
      
      
      
  
        Eukaryotic cell
         · 
        30 Jul 2010
         · 
        pmid:20675579
      
      
        
        
        
          
  
        
      
    
      
      
      
        Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.
      
      
      
  
        Genome biology
         · 
        13 Jul 2010
         · 
        pmid:20626842
      
      
        
        
        
          
  
        
      
    
      
      
      
        Genome sequence of the model mushroom Schizophyllum commune.
      
      
      
  
        Nature biotechnology
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        11 Jul 2010
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        pmid:20622885
      
      
        
        
        
          
  
        
      
    
      
      
      
        Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora.
      
      
      
  
        Fungal genetics and biology : FG & B
         · 
        01 Jul 2010
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        pmid:20601044
      
      
        
        
        
          
  
        
      
    
      
      
      
        Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).
      
      
      
  
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        14 Jun 2010
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        Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control.
      
      
      
  
        Genome research
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        01 Jun 2010
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        De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis.
      
      
      
  
        PLoS genetics
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        08 Apr 2010
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        The deadly chytrid fungus: a story of an emerging pathogen.
      
      
      
  
        PLoS pathogens
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    2009
      
      
      
        The fungi.
      
      
      
  
        Current biology : CB
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        29 Sep 2009
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        Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives.
      
      
      
  
        Genome research
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        28 Aug 2009
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        pmid:19717792
      
      
        
        
        
          
  
        
      
    
      
      
      
        Proteomic and phenotypic profiling of the amphibian pathogen Batrachochytrium dendrobatidis shows that genotype is linked to virulence.
      
      
      
  
        Molecular ecology
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        01 Feb 2009
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        pmid:19161465
      
      
        
        
        
          
  
        
      
    2008
      
      
      
        Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence.
      
      
      
  
        Systematic biology
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        01 Dec 2008
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        pmid:19085333
      
      
        
        
        
          
  
        
      
    
      
      
      
        Global gene expression profiles for life stages of the deadly amphibian pathogen Batrachochytrium dendrobatidis.
      
      
      
  
        Proceedings of the National Academy of Sciences of the United States of America
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        13 Oct 2008
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        pmid:18852473
      
      
        
        
        
          
  
        
      
    
      
      
      
        The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis.
      
      
      
  
        Nature
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        06 Mar 2008
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        pmid:18322534
      
      
        
        
        
          
  
        
      
    
      
      
      
        Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans.
      
      
      
  
        Genome biology
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        22 Feb 2008
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        pmid:18294377
      
      
        
        
        
          
  
        
      
    2007
      
      
      
        An expanded family of fungalysin extracellular metallopeptidases of Coprinopsis cinerea.
      
      
      
  
        Mycological research
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        14 Dec 2007
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        Evolution of the mating type locus: insights gained from the dimorphic primary fungal pathogens Histoplasma capsulatum, Coccidioides immitis, and Coccidioides posadasii.
      
      
      
  
        Eukaryotic cell
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        02 Mar 2007
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        pmid:17337636
      
      
        
        
        
          
  
        
      
    
      
      
      
        Evolution of budding yeast prion-determinant sequences across diverse fungi.
      
      
      
  
        Journal of molecular biology
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        03 Feb 2007
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        pmid:17320905
      
      
        
        
        
          
  
        
      
    
      
      
      
        Comparative genomic analysis of fungal genomes reveals intron-rich ancestors.
      
      
      
  
        Genome biology
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        01 Jan 2007
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        pmid:17949488
      
      
        
        
        
          
  
        
      
    
      
      
      
        An Introduction to BioPerl.
      
      
      
  
        Methods in molecular biology (Clifton, N.J.)
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    2006
      
      
      
        The evolution of mammalian gene families.
      
      
      
  
        PloS one
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        20 Dec 2006
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        BASC: an integrated bioinformatics system for Brassica research.
      
      
      
  
        Nucleic acids research
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        05 Dec 2006
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        A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis.
      
      
      
  
        BMC evolutionary biology
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        22 Nov 2006
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        pmid:17121679
      
      
        
        
        
          
  
        
      
    
      
      
      
        Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis.
      
      
      
  
        Nature
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        02 Nov 2006
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        pmid:17080091
      
      
        
        
        
          
  
        
      
    
      
      
      
        Reconstructing the early evolution of Fungi using a six-gene phylogeny.
      
      
      
  
        Nature
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        19 Oct 2006
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        pmid:17051209
      
      
        
        
        
          
  
        
      
    
      
      
      
        The Cryptococcus neoformans catalase gene family and its role in antioxidant defense.
      
      
      
  
        Eukaryotic cell
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        01 Sep 2006
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        pmid:16963629
      
      
        
        
        
          
  
        
      
    
      
      
      
        Open source tools and toolkits for bioinformatics: significance, and where are we?
      
      
      
  
        Briefings in bioinformatics
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        09 Aug 2006
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        pmid:16899494
      
      
        
        
        
          
  
        
      
    
      
      
      
        Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus.
      
      
      
  
        Gene
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        21 Jul 2006
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        pmid:16962256
      
      
        
        
        
          
  
        
      
    
      
      
      
        Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans.
      
      
      
  
        Eukaryotic cell
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        01 May 2006
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        pmid:16682456
      
      
        
        
        
          
  
        
      
    
      
      
      
        Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins.
      
      
      
  
        Genome biology
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        10 Apr 2006
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        pmid:16606443
      
      
        
        
        
          
  
        
      
    
      
      
      
        Comparative genomics in C. elegans, C. briggsae, and other Caenorhabditis species.
      
      
      
  
        Methods in molecular biology (Clifton, N.J.)
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        01 Jan 2006
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        pmid:16988423
      
      
        
        
        
          
  
        
      
    2005
      
      
      
        Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak.
      
      
      
  
        Nature
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        09 Oct 2005
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        pmid:16222245
      
      
        
        
        
          
  
        
      
    
      
      
      
        Likelihoods from summary statistics: recent divergence between species.
      
      
      
  
        Genetics
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        02 Sep 2005
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        pmid:16143628
      
      
        
        
        
          
  
        
      
    
      
      
      
        Estimating the tempo and mode of gene family evolution from comparative genomic data.
      
      
      
  
        Genome research
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        01 Aug 2005
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        pmid:16077014
      
      
        
        
        
          
  
        
      
    
      
      
      
        Investigating hookworm genomes by comparative analysis of two Ancylostoma species.
      
      
      
  
        BMC genomics
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        26 Apr 2005
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        pmid:15854223
      
      
        
        
        
          
  
        
      
    2004
      
      
      
        Identification of Cryptococcus neoformans temperature-regulated genes with a genomic-DNA microarray.
      
      
      
  
        Eukaryotic cell
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        01 Oct 2004
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        pmid:15470254
      
      
        
        
        
          
  
        
      
    
      
      
      
        Disentangling the effects of demography and selection in human history.
      
      
      
  
        Molecular biology and evolution
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        08 Sep 2004
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        pmid:15356276
      
      
        
        
        
          
  
        
      
    2003
      
      
      
        The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.
      
      
      
  
        PLoS biology
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        17 Nov 2003
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        pmid:14624247
      
      
        
        
        
          
  
        
      
    
      
      
      
        The effects of selection against spurious transcription factor binding sites.
      
      
      
  
        Molecular biology and evolution
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        25 Apr 2003
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        pmid:12716998
      
      
        
        
        
          
  
        
      
    2002
      
      
      
        The generic genome browser: a building block for a model organism system database.
      
      
      
  
        Genome research
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        01 Oct 2002
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        The Bioperl toolkit: Perl modules for the life sciences.
      
      
      
  
        Genome research
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    2001
      
      
      
        Ganglioside-induced differentiation-associated protein-1 is mutant in Charcot-Marie-Tooth disease type 4A/8q21.
      
      
      
  
        Nature genetics
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        17 Dec 2001
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        pmid:11743579
      
      
        
        
        
          
  
        
      
     
      